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Technically both of these reprint Mighty Atom (ME) #1 from 1957 because like that 1957 reprint of Pixies #4 it deletes the fourth panel on page 4 of 3rd story which is the torture scene of Polly being put on a waffle iron.
I suspect that Mighty Atom and the Pixies #IW-1 reprints Mighty Atom #3 (from 1957) which reprints Mighty Atom & the Pixies #6 from the forties rather than reprinting the older one directly but I don't know.
And this leads me to believe that Mighty Atom (ME) #3 from 1957 is a reprint of Pixies #3 from the forties and is the direct source IW's Pee-Wee Pixies #1